PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_03771
Common NameKK1_003852
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 685aa    MW: 73963 Da    PI: 6.8185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_03771genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83.1e-16345391455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  C.cajan_03771 345 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 391
                    6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.29E-17337395No hitNo description
Gene3DG3DSA:4.10.280.102.2E-20338399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-20338401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13345391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MPLYELYRLA REKLGKETNS TRAPDQCSSP ENDFFELIWE NGQISSQGQS SRVRRSPSCK  60
SLPSHCLPSH SPKSRDRDVG YGANTRMGKF GDLDSGLDGI QMSVPSREVD FCQDEDVLPW  120
LDYTTMDGSL QHEYGSDFLP ASNSFTQLDK KSNGNMGQTS FVPSRSRALD ITENNNASNA  180
NQDASYGEIT HILSSSSDFS SLKVQKQDPP MPSNGSSSTI MNFSHFARPA AIVRANLQNI  240
GLKSESATKI DQTPNQVLGD SGAKGQTAAE KSMEPTVASS SVCSGNGADA DRGSDEPNQN  300
LKRKRKDTED SECHSEDVEE ESMGVKKAVG GRGGTGSKRS RAAEVHNLSE RRRRDRINEK  360
MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGLYMPPMML PAGMQHMHAP  420
HMAPFSPMGV GMHMGFGMGY GMGMPDMNGG SSRFPMIQVP QMQGTHIPVA HMSGPTSLQG  480
MARSNPPGFG LPGQGHPMPM LRAPVFPFSG GPHVNKSALG LHACGSSGVV ETVDSASASC  540
LKDQMPNVDP HVKQITGGCD STSQMPTQCE AAAGFEQSAL AHSSGGHASN PNDKVAVNPG  600
PGKEDNLVIG KFSEYVYHLE HARAQSHIQP PLLRGKWNKL LTVELYLQVM IDKTVAMEVL  660
KSASTKSLAN YTTGYSESLR LASSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349354ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311320.0KT031132.1 Glycine max clone HN_WYQ_58 bHLH transcription factor (Glyma20g22291.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591254.10.0phytochrome-interacting factor 3.1
TrEMBLA0A151SRY80.0A0A151SRY8_CAJCA; Transcription factor PIF3
STRINGGLYMA20G22291.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-67phytochrome interacting factor 3