PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02655
Common NameKK1_002720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 165aa    MW: 18520.2 Da    PI: 6.3346
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02655genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.82.2e-4461051100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+
  C.cajan_02655   6 PCASCKLLRRRCTKDCIFAPYFPSSDPQKFALVHKVFGASNVSKMLQELPLHQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAV 101
                    7**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    +++e
  C.cajan_02655 102 AQAE 105
                    9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.75106IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-446103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAGNSPCASC KLLRRRCTKD CIFAPYFPSS DPQKFALVHK VFGASNVSKM LQELPLHQRA  60
DAVSSLVYEA HARVRDPVYG CVGAISYLQN QVSELQMQLA VAQAEIFCIQ MQQEPVMPNP  120
EMQDPDHKSY LLQNELPQYL NYASSSNVIY DSLSRESIFG HDMVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362191e-143AC236219.2 Glycine max clone GM_WBc0096D17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552226.11e-114PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW33e-73LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A151SP041e-120A0A151SP04_CAJCA; LOB domain-containing protein 12
STRINGGLYMA18G02780.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-74LBD family protein