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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_02643 | ||||||||
Common Name | KK1_002708 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TALE | ||||||||
Protein Properties | Length: 283aa MW: 32234.5 Da PI: 6.8876 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.7e-08 | 232 | 265 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + C.cajan_02643 232 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 265 469*****************************87 PP | |||||||
2 | ELK | 25.6 | 2.9e-09 | 186 | 207 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ C.cajan_02643 186 ELKIELKQGFKSRIEDVREEIL 207 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.7E-19 | 20 | 64 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.2E-17 | 22 | 63 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.2E-24 | 75 | 130 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.2E-17 | 78 | 129 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 186 | 206 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.645 | 206 | 269 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-11 | 208 | 273 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-16 | 208 | 273 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.65E-12 | 209 | 270 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 213 | 271 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 226 | 265 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MQEAAALGMM GGELSDHHHR QVKAEIATHP LYDQLLAAHV SCLRVATPID QLPLIDAQLS 60 QSHHLLRSYA SLHSHSLSPH DRQQLDNFMT QYLIVLCSFK EQLQQHVRVH AVEAVMACRD 120 IESTFQALTG VSLGEGTGAT MSDDEDDFQM DGSLDQCSAD GQDMMGFGPL LPTESERSLM 180 ERVRQELKIE LKQGFKSRIE DVREEILRKR RAGKLPGDTT SVLKAWWQQH AKWPYPTEDD 240 KAKLVEETGL QLKQINNWFI NQRKRNWHSN SQSVTSLKSK RKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 5e-13 | 209 | 265 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 262 | 282 | RKRNWHSNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible developmental regulator. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_02643 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding; up to 7-fold increase. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093900 | 0.0 | BT093900.1 Soybean clone JCVI-FLGm-17N4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020226705.1 | 0.0 | homeobox protein HD1 isoform X1 | ||||
Swissprot | P46606 | 1e-162 | HD1_BRANA; Homeobox protein HD1 | ||||
TrEMBL | A0A151SNR8 | 0.0 | A0A151SNR8_CAJCA; Homeobox protein HD1 | ||||
STRING | XP_007158449.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-165 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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