PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02571
Common NameKK1_002634
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 359aa    MW: 40402.1 Da    PI: 8.1285
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02571genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-18221312499
                    E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W+v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l v++fr
  C.cajan_02571 221 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTLENNLGEGDVCVFELLRVREVVLQVTIFR 311
                    78899******************876743...59999999********665555..66***********************999888889999998 PP

                    S CS
             B3  99 k 99 
                     
  C.cajan_02571 312 V 312
                    5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-24210311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-24211312IPR015300DNA-binding pseudobarrel domain
CDDcd100179.75E-23216311No hitNo description
SMARTSM010191.0E-18218313IPR003340B3 DNA binding domain
PROSITE profilePS5086314.029218313IPR003340B3 DNA binding domain
PfamPF023621.5E-16221312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MYEGNSSFIV HMFNLSTSEV NYQSAMRNHN EGPCFANYHH IFDEMEDVDS LDLSDSSSPF  60
LTPGALQNKV FAGSVDQLTP GKSHTPALQN LFNGGSKLNR VNWGDGGSAF SSKGANSQGN  120
QSTTRDIGVQ FNAVEFKRST DELKLRYSTN EEAANKTAKK KRKSEPNGEE PSGENEEEAE  180
MRYRFYESAS ARKRTVTAEE RERAINAAKA FEPTNPFCRV VLRPSYLYRG CIMYLPSCFA  240
EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE FTLENNLGEG DVCVFELLRV  300
REVVLQVTIF RVTEDAGLLN SPPMQLQQQQ QQSSQNMSHT KLLNPHLQHR VSPTKLVRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-7418431415144B3 domain-containing transcription factor VRN1
4i1k_B8e-7418431415144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_02571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0946860.0BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227708.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A151SNI20.0A0A151SNI2_CAJCA; B3 domain-containing transcription factor VRN1
STRINGGLYMA20G01130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-63related to vernalization1 1