PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00971
Common NameKK1_000999
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WRKY
Protein Properties Length: 302aa    MW: 33949.4 Da    PI: 10.169
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00971genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31236294360
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                    D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYeg+Hnh+k
  C.cajan_00971 236 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGDHNHPK 294
                    99***********************9988****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-16187232IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33222294IPR003657WRKY domain
PROSITE profilePS5081129.746229295IPR003657WRKY domain
SuperFamilySSF1182905.62E-27232294IPR003657WRKY domain
SMARTSM007749.1E-38234294IPR003657WRKY domain
PfamPF031065.3E-27236293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEEVEEANRA AVESCHRVLN VLSRQGDEVQ YRNLVVETGE AVVRFKNVVS KLSSGLGHAR  60
VRKSKKLNIP FSPSILLDNL TCKTDHHSKN LHQQTSSTHY HILQQQQQRL LLQQQQQQMK  120
HQAEMMFRRN SSVINLNFDS SSCTPSMSST RSFISSLSID GSVANMDGSA FHLLGAANSD  180
QNSQQHKRKC SARGDEGSVK CGSSTRCHCS KKRKHRVKRS IKVPATSNKL ADIPPDDYSW  240
RKYGQKPIKG SPHPRGYYKC SSMRGCPARK HVERCLEEPS MLIVTYEGDH NHPKLPTQSA  300
NA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20227296775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753520.0EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020225556.10.0probable WRKY transcription factor 21
RefseqXP_029129476.10.0probable WRKY transcription factor 21
SwissprotQ9SR073e-98WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A151SJ360.0A0A151SJ36_CAJCA; Putative WRKY transcription factor 39
STRINGGLYMA02G15920.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-83WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]