PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g067010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 374aa    MW: 42764.8 Da    PI: 9.5852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g067010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-06310332123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp+C+++F ++  +  H+++H
  Csa20g067010.1 310 YTCPKCNEVFDTSQKFAAHMSLH 332
                     9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-5307336No hitNo description
PROSITE profilePS501579.993310337IPR007087Zinc finger, C2H2
SMARTSM003550.0026310332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280312332IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MFNIYGDDFV NHREMSSIEM NQNSKMVQSM FTTSDHDHMN RANLFASTPS FSSYQNSHLS  60
SSSFLFNMMR RNFDSAFGVE YFSTNILNSA KYEIERVNSV MDSNPNIWIP VSLPPDFLGN  120
HGKVLNPTPL NFVYPDHDHD GPHHYAAPPH HHAAPPHHNV AFPHQRKDLN PTPLRVVYPG  180
QDYASPYHSA APSHHYDAPP HHADFLPQQR KVLNPTPISV IYPYDYVAPP HHSAAAPHQS  240
AAPPHHSAAP HHSDVFSLSS KQNHVPQDRR SLKKILKPTK TFDSEEDKKS GDDKYDGRTH  300
SIPREKNGPY TCPKCNEVFD TSQKFAAHMS LHYKSETNKE RARRLRARNK RKYRKFMATL  360
RRPKQRMELV AVE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445898.10.0PREDICTED: uncharacterized protein LOC104728641
TrEMBLR0GCH89e-99R0GCH8_9BRAS; Uncharacterized protein
STRINGscaffold_800770.13e-52(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.14e-25C2H2-like zinc finger protein