PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g038220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 264aa    MW: 28263.3 Da    PI: 10.5261
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g038220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.11.3e-37341543130
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                     +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s  +sn+s +         
  Csa20g038220.1  34 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSIRGSNNSTSlssslldhk 127
                     79*************************************************************99999777.22333333322222333444444 PP

             TCP  89 .................kaaksaakskksqksaasalnlakesrakarararertrekm 130
                                      +                                a e +++ +
  Csa20g038220.1 128 pttllgssspfilgkrvR--------------------------------ADEDSHNHN 154
                     444444322233222221................................222222111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8923993IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-3439169IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSINNNGVMI SSSSNGSALI EQQQQQKSSS SVVVKKPPAK DRHSKVDGRG RRIRMPIICA  60
ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTASVSI RGSNNSTSLS  120
SSLLDHKPTT LLGSSSPFIL GKRVRADEDS HNHNNNNSSG GKDESFTTTT PAGFWAVPAR  180
PDFGQVWSFT GGGAPVQEMF LQQHQHHQQP LFVHHHQQQQ QQQAAMGEAS AARVGNYLPG  240
HLNLLASLSG GSPGSGRRDE DPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g038220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493447.10.0PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX21e-132TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A178UB731e-125A0A178UB73_ARATH; Uncharacterized protein
STRINGXP_010493447.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-81TCP family protein