PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g037900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 259aa    MW: 30372.8 Da    PI: 8.449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g037900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-05193216123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+Cp+C+ +F ++  +  H ++ H
  Csa20g037900.1 193 YTCPKCNNVFETSQKFAAHVSSiH 216
                     9******************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.515193221IPR007087Zinc finger, C2H2
PROSITE patternPS000280195216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFATSVYTNH HGLYSSSNVS PSSFDFNNSH VAYEMRENMV STFGMPFITR VPNNAHLSQI  60
SVTQTTINRY YNIIPTNNLS TVQNEYHRAI NPNIFNSSFY PPNYWYKQHN ILNPTPLNTV  120
FPHQTFVYPT QLDIFSCSPK CYHDQLVPHH QPLKKRYRST TYFEENLGSV NSEENCEYDG  180
RTHSLPYKKY GPYTCPKCNN VFETSQKFAA HVSSIHYKNE TINERFKRDN ARNNKRLCKA  240
NQMIHEECRN IQPEEWRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424242.11e-140PREDICTED: uncharacterized protein LOC104709301
TrEMBLR0GZ561e-114R0GZ56_9BRAS; Uncharacterized protein
STRINGscaffold_602360.11e-107(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-103C2H2-like zinc finger protein