PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 771aa    MW: 85510.8 Da    PI: 7.2946
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-09506528426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e+C +f rtG+Ck+G+ C+++H+
  Csa20g026100.1 506 EECAYFIRTGHCKFGSACRYHHP 528
                     89********************9 PP

2zf-CCCH40.74.1e-13625650227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++C++f+rtG Ck+G++CkF+H++
  Csa20g026100.1 625 EQPECQYFMRTGNCKFGSSCKFHHPM 650
                     5799********************95 PP

3zf-CCCH35.31.9e-11664690127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ ++C++fa+ G+Ck+G+ CkF H++
  Csa20g026100.1 664 PGVAPCSHFAKHGICKFGPACKFDHSM 690
                     5789*********************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.109.0E-234238IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.04E-225251IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5010313.929502530IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4503529IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6503530IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6505528IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.976623651IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7623650IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6624651IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10626650IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5629648IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126663691IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6663690IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9665689IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5666691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4668690IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MPYSQLHKLG ARIKDLKMLK RLILCHSLQL VECDILIYAQ NIELIDLQGC TGLQRFPDTS  60
QLQNLRVVNL SGCTGIQSFS GVPPNIEELH LQGTHIREIP ISNATLSPKV KLDRKKLLNL  120
LENFSDVEHI DLECVTNLAK VTSYNQGMSK LVCLNMKYCS HLRSLPDMVS LESLEVLYLS  180
GCSELEEIKD FPRNLRKLYL GGTAIVELPQ LPKSLEFLNA HGCKHLKSIN LNFEQLPRHF  240
IFSNCFKLSS QVNAKLLEKG LVPSLARAKE EELIKAPEAI ICIPIDARQR SSFRLQAGPN  300
AMQDLRPWMR KPISGFGMSV VVSFQDDYHN DVGLRIRCVA TWKTRNNRPD RIIQRYFQCW  360
APTEAPKVEE DHIFVFYDTK LHPSDGEENH INLWAHEVKF EFHTVSGENN PLGASCKVTE  420
CGVEVITAPS GDTINIIEEE DTQPRKSVET INIIEEEDTL PTKPEETINI IEEEDTLPTK  480
PEETNRSLSS SEPQNIFSMP SKGEKEECAY FIRTGHCKFG SACRYHHPVS PAVQAPSVPP  540
TQQYGVVLPR PQLLPGSYVP SPYVYGPMVL RPGMAPFSGW NPHPPSMGTS SVYGIPSLSP  600
VAAFRSYPSS TDISNKEQTF PQRPEQPECQ YFMRTGNCKF GSSCKFHHPM KAASPKAIGL  660
PLRPGVAPCS HFAKHGICKF GPACKFDHSM GSSSLRHNPS TSSLTDMPVA PYPTGSSPLG  720
KLAPSSYSSD QRTEILSSSS IKAITTTGGS ETVGSGAVAD SVWGAKKFYN *
Functional Description ? help Back to Top
Source Description
UniProtNB-LRR receptor-like protein that modulates growth, cell death and freezing tolerance in a temperature-dependent manner. May be involved in defense responses. {ECO:0000269|PubMed:20444230}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0791600.0AY079160.1 Arabidopsis thaliana AT5g17890/MPI7_30 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420518.10.0PREDICTED: protein DA1-related 4
SwissprotQ9FKN70.0DAR4_ARATH; Protein DA1-related 4
TrEMBLV4N7Y40.0V4N7Y4_EUTSA; Uncharacterized protein
STRINGXP_010420518.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.11e-113Disease resistance protein (TIR-NBS-LRR class)
Publications ? help Back to Top
  1. Faigón-Soverna A, et al.
    A constitutive shade-avoidance mutant implicates TIR-NBS-LRR proteins in Arabidopsis photomorphogenic development.
    Plant Cell, 2006. 18(11): p. 2919-28
    [PMID:17114357]
  2. Li Y,Zheng L,Corke F,Smith C,Bevan MW
    Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana.
    Genes Dev., 2008. 22(10): p. 1331-6
    [PMID:18483219]
  3. Bi D, et al.
    Mutations in an Atypical TIR-NB-LRR-LIM Resistance Protein Confer Autoimmunity.
    Front Plant Sci, 2011. 2: p. 71
    [PMID:22639607]
  4. Liu J, et al.
    IBR5 Modulates Temperature-Dependent, R Protein CHS3-Mediated Defense Responses in Arabidopsis.
    PLoS Genet., 2015. 11(10): p. e1005584
    [PMID:26451844]
  5. Huang S, et al.
    Identification of Methylosome Components as Negative Regulators of Plant Immunity Using Chemical Genetics.
    Mol Plant, 2016. 9(12): p. 1620-1633
    [PMID:27756575]