PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g008460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 292aa    MW: 32532.4 Da    PI: 6.8956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g008460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.41.4e-3350163199
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f+k ltpsdv+k++rlv+pk++ae++               ++++e+++ l++ede g+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v
  Csa20g008460.1  50 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssgasdtSSSSEKGMLLSFEDEMGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVV 144
                     99***********************************9999777789************************************************ PP

                     EEEE-SSSEE..EEEEE-S CS
              B3  81 vFkldgrsefelvvkvfrk 99 
                      F++++++ ++l+++++r+
  Csa20g008460.1 145 FFQRHRSDIRRLFIGWRRR 163
                     ***98889999*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-4046172IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-3048163IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-2649152No hitNo description
PROSITE profilePS5086313.95850164IPR003340B3 DNA binding domain
PfamPF023621.0E-3050163IPR003340B3 DNA binding domain
SMARTSM010198.9E-2750164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSVNHYSTDH HHTLLWQQQQ QQQQHRQTTD TSEATTTATW LNDDLKESLF EKSLTPSDVG  60
KLNRLVIPKQ HAEKYFPLNA VVVSSGASDT SSSSEKGMLL SFEDEMGKSW RFRYSYWNSS  120
QSYVLTKGWS RFVKDKQLDP GDVVFFQRHR SDIRRLFIGW RRRGQGSSSS SAPATNSASS  180
MAAPSYRQVH HASTNYSNPP SHSEYSHYGA AVGTAAEETH STPSSSAVAG GSSRTLRLFG  240
VNLECQMDEN DGDDSVAAAA AVESPDGYYG QNMYYYYSHP HNMNIAFTGE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-474717511129DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0067000.0AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491174.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X1
SwissprotQ9FNI31e-153Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLR0GWN81e-157R0GWN8_9BRAS; Uncharacterized protein
STRINGAT5G06250.21e-151(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-132B3 family protein