PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g025930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 382aa    MW: 43512.4 Da    PI: 7.5462
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g025930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.82.3e-391473132137
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 
                     + ++drhski T+ g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i +++++                    s          
  Csa19g025930.1 147 PSRTDRHSKIKTANGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEITKIAKShshrcgfssgdesqnrpalgS---------- 231
                     5799************************************************************666666655555544444441.......... PP

             TCP  77 sssssasnsssg................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                                                                 + ++ + k+k+++ ++    +l+k++rakar+ra++rt ekm++k +++
  Csa19g025930.1 232 -----------MdtssslceltsmwtvddrgsntnttettrnkvDGRSMKRKRKRPEPHTPILKKLSKDERAKARERAKDRTMEKMMMKGRSQ 313
                     ...........1223333344444444444444556677777776666666788888888888*************************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-41148309IPR005333Transcription factor, TCP
PROSITE profilePS5136930.377149207IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.574288305IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MNNNTFSTST TISVDDYMSF PYNDHYSSQP VIPFSPSSSI DDILIHSTSN TSNNNLDHHH  60
QFLQPSPFPQ FEFDPDCALL DSFLPLNNGH DDNQTVTSDN HRPSLPFLLN NTIGDQPIEP  120
SETITHIEDS QTISTSQDPK MKKAKKPSRT DRHSKIKTAN GTRDRRMRLS LDVAKELFGL  180
QDMLGFDKAS KTVEWLLTQA KPEITKIAKS HSHRCGFSSG DESQNRPALG SMDTSSSLCE  240
LTSMWTVDDR GSNTNTTETT RNKVDGRSMK RKRKRPEPHT PILKKLSKDE RAKARERAKD  300
RTMEKMMMKG RSQSVNVVEE EVHHQGEIVK NDIINQMNSS FPMISHHRSQ EAANFSEQQQ  360
FTDLHYQFSA KPRDLMYKYN Y*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g025930.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0625810.0EF062581.1 Arabidopsis thaliana teosinte branched 1-like 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096718.10.0PREDICTED: transcription factor TCP18-like
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A178VH080.0A0A178VH08_ARATH; TCP18
STRINGXP_010487778.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-172TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]