PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g019320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 521aa    MW: 57692.8 Da    PI: 8.2851
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g019320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05107129123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Csa19g019320.1 107 FVCEICNKGFQRDQNLQLHRRGH 129
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-5106129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.22E-6106129No hitNo description
SMARTSM003550.017107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949107129IPR007087Zinc finger, C2H2
PfamPF121718.3E-5107129IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SMARTSM00355220149179IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.22E-6179204No hitNo description
SMARTSM00355180184204IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MMNKDMLLHQ HHHQPQQEQV QHQQDENMSN LTSASGGDQA SVSSGNITEA SGSNYFPHHQ  60
QQQQQQQFCI PDLSQPQKKR RNQPGNPDPE SEVIALSPKT LMATNRFVCE ICNKGFQRDQ  120
NLQLHRRGHN LPWKLKQRSN KEIIRKKVYV CPEATCVHHD PSRALGDLTG IKKHFCRKHG  180
EKKWKCDKCS KKYAVQSDCK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCEALAEETA  240
REVVLPTQNQ NSQPNPLLIC QSSSHPHSHH HQTQPNINLS SSSSSSHNII NSLHFDTNNA  300
STSNVNSSSN HLHTFPMKKE QQSNDHIINY HHNIPPWLAP QPHSHQPHDL TSSNPNSCNG  360
AGRGLFSLAS PAMSATALLQ KAAQMGSTKT TTTDLERSTH NSTLTTTMAS MMTSPSGFIN  420
SNNNNQGLFQ DYSASGFDHH GGEEAFDDTF GGFLRTNEAT TTASAARSEK SKSGGGEGLT  480
RDFLGIRPLM SHNEILSFAG LGNCINSSAS DQLHPKPWQG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133146KLKQRSNKEIIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487157.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_010487158.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLV4LDU40.0V4LDU4_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.3__1485__AT3G13810.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11