PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g008420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 333aa    MW: 37915.5 Da    PI: 6.6501
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g008420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.11.9e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf kR++g++KK +ELS+LC++ ++ ii+s+
  Csa19g008420.1 10 FITNDSSRKATFKKRKKGLMKKVNELSTLCGISACAIIYSP 50
                    89**************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.1149IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-25160IPR002100Transcription factor, MADS-box
CDDcd002665.61E-23285No hitNo description
SuperFamilySSF554551.96E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSSRKAT FKKRKKGLMK KVNELSTLCG ISACAIIYSP YDSNPEVWPS  60
NSGVQRIVSE FRTLPEMDQQ KKMVDQETFL RQRIAKASDH LRRQRKDNRE LEMTEVMFQC  120
LIGNMGMFHM NIMDLNDLGF LIEQYLKDIN RMFEILQNSG MEIGESSNAA GAVGTTFERT  180
GSMEIMASTT PPTTTPNDQA GSSSSPLAAF LNPLQQQQQQ HQQFRYPSSP HVGLYEQPPS  240
LNLNLNQNYS QNQHQWFMEM THHQPEPLNY AADDEQRGFL FMDDNHHDHH QPQDQHDQQI  300
LGDSPTVSTT VVTSSSTIPV TNPSPTNNTW FR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g008420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486066.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-123AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLR0G6N61e-149R0G6N6_9BRAS; Uncharacterized protein
STRINGXP_010486066.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-113AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]