PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g002760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 365aa    MW: 40517.7 Da    PI: 7.3276
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g002760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.68.2e-33721932105
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s+++++  ++++s  + ++   +      
  Csa19g002760.1  72 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSlfNHHQSFLNLGQRPVHqdptql 166
                     689*************************************************************9999988877666666666644444566667 PP

             TCP  89 .............kaaksaakskksqksaa 105
                                      s+ + ++++k ++
  Csa19g002760.1 167 gfkinggcveetsT---SSREVNNKEKGDN 193
                     77777777764331...2222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.6E-2974181IPR005333Transcription factor, TCP
PROSITE profilePS5136931.31474132IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNIVPWKDAN DEVSGGALAR REGDVEEDQE EDQARATSGK TVIKKPPTSI SSSSSSWMKS  60
KDPRIVRVSR AFGGKDRHSK VCTLRGLRDR RVRLSVPTAI QLYDLQERLG VDQPSKAVDW  120
LLDAAKEEID ELPPLPISPE NFSLFNHHQS FLNLGQRPVH QDPTQLGFKI NGGCVEETST  180
SSREVNNKEK GDNDVVFTNN HHHIGSYGTY HHNMEHHHHH HHQHQHLSFQ GDYHQHQLHS  240
LVPFPSQILV CPMTTSTTKT TIQSLFPSSS SAGSGTMETI DPRQMASHFQ MPLMGNSSSS  300
SSQNISTLYS LLHGSSSNNN GGRDINNRMP YVQFSRDNTT TAASMSKLRG SESSSTSRGS  360
EHHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1979133155Putative transcription factor PCF6
5zkt_B2e-1979133155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g002760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0144650.0AB014465.1 Arabidopsis thaliana mRNA for TFPD, complete cds.
GenBankATAC0097550.0AC009755.7 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence.
GenBankATAC0116640.0AC011664.10 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence.
GenBankBT0019820.0BT001982.1 Arabidopsis thaliana expressed protein (At3g02150) mRNA, complete cds.
GenBankBT0088390.0BT008839.1 Arabidopsis thaliana At3g02156 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485452.10.0PREDICTED: transcription factor TCP13-like
SwissprotQ9S7W50.0TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A178VKM00.0A0A178VKM0_ARATH; TFPD
STRINGXP_010485452.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-176plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]