PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g039990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 250aa    MW: 26998.6 Da    PI: 7.8878
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g039990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0595117123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ CgksFs+   L  H  +H
  Csa18g039990.1  95 YKCTVCGKSFSSYQALGGHKTSH 117
                     9***********99998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.51E-1194117No hitNo description
SMARTSM003550.002895117IPR015880Zinc finger, C2H2-like
PfamPF139129.4E-1495119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-595117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.21995122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576678.51E-11166193No hitNo description
SMARTSM003550.95171193IPR015880Zinc finger, C2H2-like
PfamPF139129.5E-11171195IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265171193IPR007087Zinc finger, C2H2
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MALETLNSPT ATTTTTVRPL LRYREEMEPE NLEQWAKRKR TKRQRFDHYQ QNQETNTKLP  60
SEEEYLALCL LMLARGSAVQ SPPPSRPSPY DHRDYKCTVC GKSFSSYQAL GGHKTSHRKP  120
TNNSTAIITS GNQELSNNNS HHSNSNGGPV VINVTVNTSN GAAGQTNGKI HTCTICFKSF  180
TSGQALGGHK RCHYDGGNNG SSNSVEVVAG GSDVSDVENE RSSEESAIGG GHRGFDLNLP  240
ADQVSVTTS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g039990.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484494.10.0PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW11e-125AZF1_ARATH; Zinc finger protein AZF1
TrEMBLR0EU431e-134R0EU43_9BRAS; Uncharacterized protein
STRINGXP_010484494.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-123zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]