PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g036390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 432aa    MW: 46420 Da    PI: 8.9041
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g036390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.38.3e-39135194362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++ +kcprC+st+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s
  Csa18g036390.1 135 DHPQKCPRCESTHTKFCYYNNYSLAQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 194
                     6789*****************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-34123188IPR003851Zinc finger, Dof-type
PfamPF027012.4E-32136192IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.602138192IPR003851Zinc finger, Dof-type
PROSITE patternPS013610140176IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
SNPEEKKGPL LASFLFTSQP PNSSLPSHLI SLLLLLPLSL SLYFVQRLLL KVSLSPKLNK  60
QTKHKMGLTS LQVCMDSDWL QEAESSGGSM LDSSTNSPSA ADILAACSTR PQASAVAVAA  120
AALMDGGRRL RPPHDHPQKC PRCESTHTKF CYYNNYSLAQ PRYFCKTCRR YWTKGGTLRN  180
IPVGGGCRKN KKPSSPNSSS STSSGKKPSN IVATNTTDLM ALAQTYQNSP LGFSHFGGMM  240
GSYSTPEHSN VGFLESKYGG LVPQSPRPID FLDSKFDLMG VNNDNLVMVD HGSNRDYHHH  300
HHHMGLHHGL GLNNNNGGFN GISPGSNGNG GGLMDISACQ RLMLSSYDHQ HYNHQEDHQR  360
VTTITDVKPN PKLLSLDWQQ DQCYSNGGGN GGVGKSDGGG YGGGGYINGL GSSWNGLMNG  420
YGSSTKTNSL V*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g036390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2289920.0AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484008.10.0PREDICTED: dof zinc finger protein DOF5.6-like
SwissprotQ9FM031e-174DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBLD7MNC90.0D7MNC9_ARALL; Uncharacterized protein
STRINGXP_010484008.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63742746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.11e-169Dof family protein
Publications ? help Back to Top
  1. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]