PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g034350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 364aa    MW: 40760.5 Da    PI: 7.0482
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g034350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.21.3e-2962173389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssasec 73 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  +++l+ +                        s       
  Csa18g034350.1  62 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEEAKDDVDKLPPLqfphgfnqmypnlmfgnsgfgespS------- 149
                     78*************************************************************5555554444444444443332220....... PP

             TCP  74 eaesssssasnsssg............k 89 
                         s ss+ +++s+            +
  Csa18g034350.1 150 ----STSSTTFPGSNlgflenwdlggsS 173
                     ....222222222223344444444431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.7E-2763183IPR005333Transcription factor, TCP
PROSITE profilePS5136929.30163121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRSRECDEEE IHAKQEGDSN QNHQVNLNHM LQQQQPSTVS SSRQWTSAFR NPRIVRVSRT  60
FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LEEAKDDVDK  120
LPPLQFPHGF NQMYPNLMFG NSGFGESPSS TSSTTFPGSN LGFLENWDLG GSSRTRSRIT  180
DTTTTHRESF DLDKGKWIKH DENSNQDHQG FNHQHFPLTN PYNNTSSYYN LGHLQQSLEQ  240
SGNNVTVAIS NVAANNNNNL NLPPPSSSAP RDGSQLFFGP TPPAMSSLFP TYPSFLGASH  300
HHNHHHHQVV DGAGHLQLFS SNSNTATQQQ MMTGNTSLIR PFHHLMSSNH DTDRHSSDND  360
SDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1968122155Putative transcription factor PCF6
5zkt_B4e-1968122155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g034350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0082690.0AB008269.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3.
GenBankBT0294890.0BT029489.1 Arabidopsis thaliana At5g60970 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483755.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_010483756.10.0PREDICTED: transcription factor TCP5-like
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLR0EXI80.0R0EXI8_9BRAS; Uncharacterized protein
STRINGXP_010483755.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-168TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]