PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g030550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 151aa    MW: 16968.7 Da    PI: 7.0413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g030550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-055274123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  Csa18g030550.1 52 FSCNYCQRKFYSSQALGGHQNAH 74
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-64979No hitNo description
PROSITE profilePS5015711.0945279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDFQPNTSLH LSLPSYKNHQ LNLELVLEPS SMSSSSSSST NSSSCLEQPR VFSCNYCQRK  60
FYSSQALGGH QNAHKLERTL AKKSRELFRS STTVDSDQPY PFSGRFELYG RGYEGFVESG  120
SSRDFSARRV PENGLDQEQE MSHLDLSLRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0114820.0AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB0.0L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483275.11e-106PREDICTED: zinc finger protein 2-like
SwissprotQ392615e-91ZFP2_ARATH; Zinc finger protein 2
TrEMBLR0GS963e-92R0GS96_9BRAS; Uncharacterized protein
STRINGBra006815.1-P3e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-90zinc finger protein 2