PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g022790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 311aa    MW: 33584 Da    PI: 7.5489
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g022790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.47.6e-3665137374
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 
                     +k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++ +a ++  
  Csa18g022790.1  65 KKRLPTKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTVPAIAVsV 137
                     67889**********************************************************8888844421 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-2970146IPR005333Transcription factor, TCP
PROSITE profilePS5136927.85370124IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MESNREGKAI REIDENVDQV VTMTNLFDPD PKTNPGLLMK KEQVRFLQPS TTMMMSNSLE  60
PAPKKKRLPT KDRHTKVEGR GRRIRMPAGC AARIFQLTRE LGHKSDGETI RWLLERSEPA  120
IIEATGTGTV PAIAVSVNGT LKIPTTSPND GDGDLMKRRK RNCTNDFVNV NEHDSCHSSV  180
TSGLAPITAS NYGVNIMNVN TQGLVPFWPM GMGIGMGTAF VTSDPNQMGQ MWAIPTVATA  240
PFLNLGTTPV SSYVSDASLV AEPHMETSGG EGGAAQSLRD FSLEIYDKKE LQFLGGSGNS  300
SPSSSCHNKT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g022790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482537.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT891e-145TCP19_ARATH; Transcription factor TCP19
TrEMBLR0EXS11e-170R0EXS1_9BRAS; Uncharacterized protein
TrEMBLR0GMZ11e-169R0GMZ1_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010482537.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-147TCP family protein