PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g090500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 303aa    MW: 32758.6 Da    PI: 7.3974
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g090500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.2e-15223258134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg
  Csa17g090500.1 223 CRHCGIGEksTPMMRRGPAGPRTLCNACGLMWANKG 258
                     ****865556***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.51377112IPR010399Tify domain
SMARTSM009797.6E-1177112IPR010399Tify domain
PfamPF062003.0E-1179111IPR010399Tify domain
PfamPF062032.1E-15147189IPR010402CCT domain
PROSITE profilePS5101712.987147189IPR010402CCT domain
SMARTSM004019.2E-12217270IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.642217265IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-13218282No hitNo description
Gene3DG3DSA:3.30.50.105.6E-15221264IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.13E-15222272No hitNo description
PfamPF003203.2E-13223258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEDLHGSNAR MHIGEAQDPM HVQYEHHALH HIHNGSGMVD DHADGGNAGA MSEGVEADIP  60
SHPGNITDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP EKVQAVLLLL GGRELPQAPP  120
TSLGSAHQNN RALGLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ  180
RNKGQFTSAK SNNDEAASAG SSWVSNQTWA IEGSEAQNQE ISCRHCGIGE KSTPMMRRGP  240
AGPRTLCNAC GLMWANKGAL RDLSKGASPQ TPLNVPLSKN EDANLEAGQM MISVANNVSD  300
SQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g090500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479649.10.0PREDICTED: GATA transcription factor 28 isoform X2
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP10.0R0IMP1_9BRAS; Uncharacterized protein
STRINGXP_010479648.10.0(Camelina sativa)
STRINGXP_010500738.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.20.0ZIM-LIKE 2