PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g089890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 367aa    MW: 41399.4 Da    PI: 6.2588
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g089890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.6e-104996154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    ++ykGV +   +g W A+I+       ++r++lg+f +a eAa+ ++ a  kl+
  Csa17g089890.1 49 TKYKGVVQQQ-NGNWGAQIYAD-----HRRIWLGTFKSAAEAAASYDSASIKLR 96
                    69****9888.8******9993.....4*********************99997 PP

2B387.61e-27186284183
                     EEEE-..-HHHHTT-EE--HHH.HTT................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                     f k+ltpsdv+k++rlv+pkk+a +h                g          ++ ++d++ r+W+++++y+k+s+++v+t+GW+ Fvka++Lke
  Csa17g089890.1 186 FHKELTPSDVGKLNRLVIPKKHAVKHlpyisddhnekeegetG---GavdDLEDIEFYDREMRQWKFRYCYWKSSQSFVFTRGWNAFVKAKNLKE 277
                     89*****************************998666555552...05555669***************************************** PP

                     T-EEEEE CS
              B3  77 gDfvvFk 83 
                     +D++vF+
  Csa17g089890.1 278 KDIIVFY 284
                     ******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.57E-2249109No hitNo description
SMARTSM003809.3E-1550113IPR001471AP2/ERF domain
PROSITE profilePS5103216.9550107IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1350108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-1550107IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.8E-30183285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-25184285IPR015300DNA-binding pseudobarrel domain
CDDcd100177.70E-25185284No hitNo description
PROSITE profilePS5086310.701186301IPR003340B3 DNA binding domain
SMARTSM010191.6E-18186301IPR003340B3 DNA binding domain
PfamPF023627.6E-25186284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDMDEMSNED KTTTETSGSS DSVLPLMKRV KPTVVVETPP ALSNTVTTTK YKGVVQQQNG  60
NWGAQIYADH RRIWLGTFKS AAEAAASYDS ASIKLRSFDA NSHRNFPWSD FTVHEPDFQK  120
PFTTEAVLNM IKEGSYQHKF RDFLKLRSQM VACINIGGSK QVQGGGGRGE AAQESGNCFS  180
WTTELFHKEL TPSDVGKLNR LVIPKKHAVK HLPYISDDHN EKEEGETGGA VDDLEDIEFY  240
DREMRQWKFR YCYWKSSQSF VFTRGWNAFV KAKNLKEKDI IVFYDCNVPS DAKTLEGQSK  300
NFKMIDVHYF SGNGFMVPEE VNKTAQESSG EEMKTGNVFS SKLEDEEPKS EEKKGGGFML  360
FGVRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2518528713104DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g089890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479572.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLR0IGJ80.0R0IGJ8_9BRAS; Uncharacterized protein
STRINGXP_010479572.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-170RAV family protein