PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g048460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 365aa    MW: 39500.2 Da    PI: 8.9901
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g048460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000583659123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    +kC+ C+k  s+ s ++ H    H
  Csa17g048460.1 36 FKCHVCHKKLSTASGMVIHVLQvH 59
                    89*****************87656 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080812.716766IPR003656Zinc finger, BED-type
SuperFamilySSF576675.95E-51261No hitNo description
SMARTSM00355201235IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
SMARTSM003550.0843659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGKKKKRATE KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MVIHVLQVHK  60
ENVTKVPNAK TGRDSTDIEI YGMQGIPPDV LAAHYGEEEE EPPAKAAKVE IPSTPLGGVV  120
PRPYGMVYPP QQMPGVVRPM YYPGATMRPP GPVWPMPPPR PQQWYPQNPA ASVPPAAHLG  180
YRPQPLFPVQ NMGMTLPTSA PVVQPSPMPG VTPPGIPSSS PAMPVPQPLF PVVNNSIPSQ  240
ASPFSTPLPV GGAQQPSHAD ALGSVNAYPP NNSIPGGTNS HSYASGPNTS GPSIGPPPVI  300
ANKAPSNQPN EVYLVWDDEA MSMEERRMSL PKYKVHDETS QMNSINAAID RRISESRLAG  360
RMAF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0856120.0AY085612.1 Arabidopsis thaliana clone 16162 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478541.10.0PREDICTED: protein SUPPRESSOR OF FRI 4 isoform X2
SwissprotQ9C5G00.0SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLD7KGH70.0D7KGH7_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.1__3297__AT1G30970.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.10.0C2H2 family protein