PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g046030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 276aa    MW: 31720.1 Da    PI: 5.6164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g046030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.1e-08157201655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r+RR+ri ++ +eL +l+P +     +K + ae+ + A +Y+k Lq
  Csa17g046030.1 157 SIAARKRRRRITEKTHELGKLIPGS-----QKHNTAEMFQAAAKYVKFLQ 201
                     6788*******************98.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.709151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10152210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-10154210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-5157201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDCLSYFSNS DAIQLEDCFI PELDTFFFQA QPQHQLHQPL HLEEALSPSL CEFSHFYEPF  60
LPPQDIFLPS PKTEVFNESQ DLDAFFPTPK HQKLINSSFH FNTNDPFFPS PNPNLLDSFI  120
TETSNFSEFL VPDFSPAFKV GWSDKCDTKK PELSAQSIAA RKRRRRITEK THELGKLIPG  180
SQKHNTAEMF QAAAKYVKFL QAQIEIFQLK QTNVQTWESS KVGREMQFLL ASQGIQEKLS  240
TEEVCVVPRE MVQVLKAEEC ILRNPRISRD LNKLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164RKRRR
2161166KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g046030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885871e-173AF488587.1 Arabidopsis thaliana clone bHLH052 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478497.10.0PREDICTED: transcription factor bHLH52-like
SwissprotQ9SA821e-133BH052_ARATH; Transcription factor bHLH52
TrEMBLR0INR81e-161R0INR8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010478497.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-125bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]