PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g043170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 457aa    MW: 51152.8 Da    PI: 8.7759
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g043170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.43.7e-3247132279
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesss 79 
                      g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i +l+          +++++s+c++++s+
  Csa17g043170.1  47 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPIntnfdlenQNQTKSACSSGTSE 132
                     689***********************************************************996666665544444455222222 PP

2TCP113.23.5e-351692852134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                      g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i +l+  +++          +++++        ++  +
  Csa17g043170.1 169 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPINTNFD--L-----ENQNQ--------TK--S 246
                     689************************************************************944444..2.....22222........22..3 PP

             TCP  97 skksqksaasalnlak.esrakarararertrekmrikn 134
                       +s +s++s l+l++ e r kar+rarert+++  ++ 
  Csa17g043170.1 247 ACSSGTSESSLLSLSRtEIRGKARERARERTAKDRDKDL 285
                     344556666679999999*************99987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3348142IPR005333Transcription factor, TCP
PROSITE profilePS5136930.78849107IPR017887Transcription factor TCP subgroup
PfamPF036343.4E-33170292IPR005333Transcription factor, TCP
PROSITE profilePS5136930.788171229IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.836263281IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MELDEHVEVQ RQQQQSRKLQ RFTDDNTGMM KDWNNPSSRI IRVSRASGGK DRHSKVLTSK  60
GLRDRRIRLS VATAIQFYDL QDRLGFDQPS KAVEWLINAA SDSITDLPPI NTNFDLENQN  120
QTKSACSSGT SESSLLSLSX LQRFTDDNTG MMKDWNNPSS RIIRVSRASG GKDRHSKVLT  180
SKGLRDRRIR LSVATAIQFY DLQDRLGFDQ PSKAVEWLIN AASDSITDLP PINTNFDLEN  240
QNQTKSACSS GTSESSLLSL SRTEIRGKAR ERARERTAKD RDKDLQNAHQ SSFTQLLTGG  300
FDQQQQQQQP DNHRNWTGGS DCFNPVQFIP NSSSTSHQEP PTMNQNNHPF SFVPDQYNFG  360
ISSSSALNGG YSSRGTLQSN SQSLFLNNNI TQRASISSSS SSSSSPMDSQ SISFFMATPP  420
PLDHHSHQLP STFDGRLYLY YGEGNRNSDD KDKDRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1954230155Putative transcription factor PCF6
5zkt_B1e-1954230155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g043170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735061e-154AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence.
GenBankAY0350081e-154AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankAY0576721e-154AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds.
GenBankAY1138981e-154AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankCP0026841e-154CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478402.10.0PREDICTED: transcription factor TCP24-like
SwissprotQ9C7581e-164TCP24_ARATH; Transcription factor TCP24
TrEMBLR0I1L01e-170R0I1L0_9BRAS; Uncharacterized protein
STRINGXP_010478402.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-111TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]