PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g037980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 243aa    MW: 27417.6 Da    PI: 4.731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g037980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-183887255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  Csa17g037980.1 38 KYVGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 87
                    79*******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-133887IPR001471AP2/ERF domain
PROSITE profilePS5103221.2463895IPR001471AP2/ERF domain
SMARTSM003802.9E-3238101IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-213896IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-283895IPR001471AP2/ERF domain
CDDcd000181.24E-313894No hitNo description
PRINTSPR003676.3E-93950IPR001471AP2/ERF domain
PRINTSPR003676.3E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEINGNSNAG SSSRSKKSHR QKQQQPQPQP QQHNEEIKYV GVRRRPWGRY AAEIRNPTTK  60
ERYWLGTFDT AEEAALAYDR AARSIRGLTA RTNFVYSDMP RGSSVTSFIS PDESQRFISE  120
LFNPPSQPEA RYNNTNNLYT SSNNQNQNSI EFSYNGWPQE SESGYQSMNS NDEHCDHELP  180
PLPPSTCFGA ELTIPETDNY WNVAHANIDT FAFELDGFVD QNSLGQSGTE GFDSLSSTFF  240
NQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1835941171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g037980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankAC0694710.0AC069471.4 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480691.10.0PREDICTED: ethylene-responsive transcription factor ERF087
SwissprotQ9FZ901e-143ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLR0I9T41e-142R0I9T4_9BRAS; Uncharacterized protein
STRINGXP_010480691.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-119ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]