PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g037510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 249aa    MW: 26724.6 Da    PI: 8.3977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g037510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-0594116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+Fs+   L  H  +H
  Csa17g037510.1  94 YKCTVCDKTFSSYQALGGHKASH 116
                     9***********99999998887 PP

2zf-C2H210.80.0016153172120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++C+ksF++   L  H 
  Csa17g037510.1 153 HVCSICNKSFPSGQALGGHK 172
                     79*********988776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-494117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-1394118IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.13894121IPR007087Zinc finger, C2H2
SMARTSM003550.003294116IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.23E-994116No hitNo description
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-9148175No hitNo description
PROSITE profilePS501579.473153180IPR007087Zinc finger, C2H2
PfamPF139121.6E-13153177IPR007087Zinc finger, C2H2
SMARTSM003550.033153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM  60
LLARDGDRKH HQPSPPLLPA AAVTAEKTME KLSYKCTVCD KTFSSYQALG GHKASHRKNL  120
SQTHSGGGGG GDDQSTSSAT TTSAVTTGSG KSHVCSICNK SFPSGQALGG HKRCHYEGNN  180
NNNNNNNSSS VSNSEGAGST SHVSSSHRGF DLNIPPIPEF STVNGDDEVM SPMPTKKPRF  240
DFPVKLQL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2503361e-139AF250336.1 Arabidopsis thaliana zinc finger protein STZ/ZAT10 (STZ/ZAT10) mRNA, complete cds.
GenBankAC0123751e-139AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankCP0026841e-139CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankAY0630061e-139AY063006.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankAY0349981e-139AY034998.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds.
GenBankX986711e-139X98671.1 A.thaliana zat10 gene.
GenBankX986701e-139X98670.1 A.thaliana mRNA for ZAT10 protein.
GenBankX955731e-139X95573.1 A.thaliana mRNA for salt-tolerance zinc finger protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478125.10.0PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962891e-138ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLR0GRN81e-145R0GRN8_9BRAS; Uncharacterized protein
STRINGAT1G27730.11e-136(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-119salt tolerance zinc finger