PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g039700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 469aa    MW: 50356 Da    PI: 9.5305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g039700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.6e-05208230223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      C+ Cg++F+  ++L+ H+ + H
  Csa16g039700.1 208 ACSQCGEVFPKLESLELHQAVrH 230
                     6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808207235IPR007087Zinc finger, C2H2
PROSITE patternPS000280207230IPR007087Zinc finger, C2H2
SuperFamilySSF563995.58E-19232464No hitNo description
Gene3DG3DSA:3.90.228.101.3E-12234464IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MALLTFLPEN AEPPQKHNPP SSKRKKRENP TDQTQPHKQK PHKPQKSKKA VLPKQPSSWD  60
QIKNLLTCKQ IEGSRVHDPS KNSQPAPSIT TNLSPSKLGS SCSSICSFRD VAHGNTRVVH  120
RADHSPDVAN STAPDSETRL LTRKPGQHGS SSSRSLTSGS TRSNASGSYT SSSTTSFRAM  180
QFRKLSGCYE CHMIVDPSRY PISPRVCACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS  240
GRNIVEIIFK SSWLKKDSPI CQIERILKVH NTQRTIQRFE DCRDAVKARA LQTTRKDARC  300
AADGNELLRF HCTTLTCSLG ARGSSSLCSN LPGCGVCNAI RHGFLGKSAG GGGATATASV  360
GGVRTTASSG RADDLLTCSD DARRVMLVCR VIAGRVKRIN LLAAEASATA ETKSPVEDSS  420
AVGVSSSGGV FDSVAVNAGV YSNLEELVVY NPRAILPCFV VIYKVLES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471696.10.0PREDICTED: uncharacterized protein LOC104751448
TrEMBLR0HU070.0R0HU07_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.2__1849__AT1G75710.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein