PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g034670.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 948aa    MW: 99544.2 Da    PI: 9.9167
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g034670.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.21.4e-3856164289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 
                     +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s    +   +   
  Csa16g034670.2  56 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 147
                     5789************************************************************999998874333333333322221...0222 PP

             TCP  89 ................k 89 
                                     +
  Csa16g034670.2 148 assplssfhttgmslyE 164
                     33444433333333431 PP

2TCP125.45.9e-39302410289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 
                     +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s    +   +   
  Csa16g034670.2 302 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 393
                     5789************************************************************999998874333333333322221...0222 PP

             TCP  89 ................k 89 
                                     +
  Csa16g034670.2 394 assplssfhttgmslyE 410
                     33444433333333431 PP

3TCP125.36.6e-39620728289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 
                     +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s    +   +   
  Csa16g034670.2 620 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 711
                     5789************************************************************999998885333333333322221...0222 PP

             TCP  89 ................k 89 
                                     +
  Csa16g034670.2 712 assplssfhttgmslyE 728
                     33444433333333331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-3562182IPR005333Transcription factor, TCP
PROSITE profilePS5136928.03162116IPR017887Transcription factor TCP subgroup
PfamPF036343.8E-35308428IPR005333Transcription factor, TCP
PROSITE profilePS5136928.031308362IPR017887Transcription factor TCP subgroup
PfamPF036343.8E-35626746IPR005333Transcription factor, TCP
PROSITE profilePS5136928.031626680IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 948 aa     Download sequence    Send to blast
MELHTNQNSG VSDSTLQLNS SDKHSIPFVG AMSTTTSSTS NSTSTSSGTA LAVVKPAAKK  60
PSKDRHTKVD GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIASTGTG  120
TIPANFSTLN ASLRGGGSTL FAQPSKSASS PLSSFHTTGM SLYEDSNGTN NGSSSVDPSR  180
KLLNSAAAPQ NAAAVFGFHH QMYPPIMSTE RAPSNLVKSY REDYFKEPSG SGAEPSGSSQ  240
KQGKRIMELH TNQNSGVSDS TLQLNSSDKH SIPFVGAMST TTSSTSNSTS TSSGTALAVV  300
KPAAKKPSKD RHTKVDGRGR RIRMPAMCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII  360
ASTGTGTIPA NFSTLNASLR GGGSTLFAQP SKSASSPLSS FHTTGMSLYE DSNGTNNGSS  420
SVDPSRKLLN SAAAPQNAAA VFGFHHQMYP PIMSTERAPS NLVKSYREDY FKEPSGSGAE  480
PSGSSQKQGQ FQDQELGQGG RAAATANVVP QPMWAVAPGT TNGGSAFWML PMSGSGGREQ  540
MQQQPGHQMW AFNPGNYPVG SGRVMELHTN QNSGVSDSTL QLNSSDKHSI PFVGAMSTTT  600
SSTSNSTSTS SGTALAVVKP AAKKPSKDRH TKVDGRGRRI RMPAMCAARV FQLTRELGHK  660
SDGETIEWLL QQAEPAIIAS TGTGTIPANF STLNASLRGG GSTLFAQPSK SASSPLSSFH  720
TTGMSLYEDS NGTNNGSSSV DPSRKLLNSA AAPQNAAAVF GFHHQMYPPI MSTERAPSNL  780
VKSYREDYFK EPSGSGAEPS GSSQKQGQFQ DQELGQGGRA AATANVVPQP MWAVAPGTTN  840
GGSAFWMLPM SGSGGREQMQ QQPGHQMWAF NPGNYPVGSG RVVTAPMGSM MLGGQQLGLG  900
VAESNMAAAM RGGSRGDGLA MTLDQHQHQH QEPNQTQASE NGGDDKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g034670.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471223.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLR0I9T30.0R0I9T3_9BRAS; Uncharacterized protein
STRINGXP_010471223.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-157TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]