PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g030650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 326aa    MW: 37161.7 Da    PI: 7.7375
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g030650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.9e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf kR++g++KK +ELS+LC++ ++ ii+s+
  Csa16g030650.1 10 FITNDSSRKATFKKRKKGLMKKVNELSTLCGISACAIIYSP 50
                    89**************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.979149IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-24160IPR002100Transcription factor, MADS-box
CDDcd002663.43E-21285No hitNo description
PRINTSPR004042.5E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-24495IPR002100Transcription factor, MADS-box
PfamPF003193.0E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTSKKVKLAF ITNDSSRKAT FKKRKKGLMK KVNELSTLCG ISACAIIYSP YDSNPEVWPS  60
NSGVQRIVSE FRTLPDMDQQ KKMVDQETFL RQRIAKASDH FRRLRKDNRE LQMKEVMFQC  120
LIGNMGKFHM NIMDLNDLGF TIEQYLKNIN RRFEILQNSG MEIGESSNAG AVGTTFERTG  180
SMEVMASTTP PTTTPNEAGS SSSSLAAFLN PLQQQQQQQH QHFRYPSSPH DGLYEQPPSL  240
NLNLNQNYSQ NQQQWFMEMM HHQHEPLNYA ADDEQRGFLF MDDHHQPQDQ HQQILGDSST  300
VSTVVTSSST IPVTNPSPTN NTWFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g030650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474228.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-117AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLR0G6N61e-144R0G6N6_9BRAS; Uncharacterized protein
STRINGXP_010474228.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-105AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]