PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g023380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 282aa    MW: 31992.3 Da    PI: 7.3007
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g023380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.81.8e-151056248
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    +ien+s r+  f k ++g  KK +ELSvLC++e++ +i+s+++ + e
  Csa16g023380.1 10 FIENDSMRKARFNKGKKGFVKKIHELSVLCGIEACAVIYSPSNSVLE 56
                    8****************************************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.92E-22185IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.848161IPR002100Transcription factor, MADS-box
CDDcd002663.33E-29285No hitNo description
PRINTSPR004041.9E-9323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-141054IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTRKKLNLSF IENDSMRKAR FNKGKKGFVK KIHELSVLCG IEACAVIYSP SNSVLEVWPS  60
NLGVKNVVEK FEMLTNMEQE KKMVNHEGFL KQNISKGMGN NKRKMKDNTE RMMKEAMFEL  120
LGGKADRFKV TNKHREDLCE YIDQYLKELY HHKNKTLRQS HVEYGESLEA ATNVMAPTSS  180
VEVNSQFSPT LIVSNSPQVT NDLLPLRPII SSSQIPEEVN TFTVINPVGV YDHNANVNHL  240
GHNQYQQQDG YPTIVPQYGI DNPSQNQGQQ AEWLVSDDDL S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g023380.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486064.11e-174PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLS6BIQ21e-116S6BIQ2_TURGL; Agamous-like MADS-box protein AGL45 (Fragment)
STRINGXP_010486064.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.11e-103M-type_MADS family protein