PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g018640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 399aa    MW: 42487.6 Da    PI: 6.6448
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g018640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.72.1e-38572202122
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++       
  Csa16g018640.1  57 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvpl 151
                     789******************************************************************99988888888888666667777778 PP

             TCP  89 ...................................kaaksaakskksqksaasalnlakesrakarara 122
                                                        ++ +++++++++q++ ++  +  + sr++ r+  
  Csa16g018640.1 152 ygalglthhhqhqfdeqggafaaaaahaapllgfhHHLQQHHHHHQNQAPVETIPDGENFSRKRYRSID 220
                     888888888878888888889888887777777765566666666666666666666666665555443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-4162226IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41163117IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDLSDIRNNN DTAAAVTTGL GGGARQLVDA SLTIVPRSTP LEDSTLSTTT TAAVAATTTK  60
RSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT  120
GTIPANFSTL SVSLRSSGST LSAPPSKSVP LYGALGLTHH HQHQFDEQGG AFAAAAAHAA  180
PLLGFHHHLQ QHHHHHQNQA PVETIPDGEN FSRKRYRSID LSKEDDDDRK QNESKSLKES  240
ETPDPAAAPM WAVAPTSRSS GGNTFWMLPV PPGNQMESSS NNNNNSAGHR APMWPFVNSA  300
GAGAATHFMA GTGFSFPMDQ YRGSPLQLGS FVAQPQPTQN LGLSMPDSKL GMLAALNAAY  360
SRGGNGNGNG EQAVEHQEKP QQSDHDEESR EENSNSSE*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g018640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470288.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5180.0TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A178WFL50.0A0A178WFL5_ARATH; TCP8
STRINGXP_010470288.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-163TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]