PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g017430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 301aa    MW: 34354.8 Da    PI: 7.0705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g017430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.4e-171458246
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                     ien+s r+ tf kR++g  KK +ELSvLC++e++ +i+ + + +
  Csa16g017430.1 14 YIENDSMRKATFNKRKKGFVKKIHELSVLCGIEACAVIYNPFNSV 58
                    59************************************9887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-22564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.199565IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-24689IPR002100Transcription factor, MADS-box
CDDcd002665.10E-34689No hitNo description
PRINTSPR004049.9E-11727IPR002100Transcription factor, MADS-box
PfamPF003192.5E-161556IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-112742IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-114263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVNITTRKKL NLSYIENDSM RKATFNKRKK GFVKKIHELS VLCGIEACAV IYNPFNSVPE  60
VWPSNLGVKN VVEKFEMLTV MEQEKKMVNH EGFLKQNISK AMANNKRKMN DNEERMMKEA  120
MFELLGGKAD RLKLTNRHRE DLCKYIDQYL KELYHHKNKI LRQSHVEYGE SSEAATNVMA  180
PTSSVEVNSQ FFPTLNVSNS PQVTNDLWPL RPIFSSSHMP EEVNTFPGNN LSAAAAQKDY  240
YPVINPVGVY DHNANVNHLG HNQYQQQDGY PAIVPQYGID NPSQNQGQQE EWLVSDDDIS  300
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g017430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486064.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-47AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLS6BIQ21e-135S6BIQ2_TURGL; Agamous-like MADS-box protein AGL45 (Fragment)
STRINGXP_010486064.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.11e-106M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]