PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g007280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 905aa    MW: 98283.9 Da    PI: 7.5996
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g007280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06113133526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     lC+ffa+ G+C  G +CkF H+
  Csa16g007280.1 113 LCKFFAK-GWCFNGVSCKFLHV 133
                     8******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0081108134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4113134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004113135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MSDSDMDIDD DEVEQKVQVH TIGGESQLLH KPIQAPNPQN GNSFVHSNSS HVDVKRHSVT  60
TPSNEQANII KEQAFAQDNG TLSRFPAPGI TPNSFFPAAG EGNEPEQKRA AHLCKFFAKG  120
WCFNGVSCKF LHVKENSNCT SQQQPENNMA GSSYIQSDVA RRISDSNEGV RVSQLIGNGV  180
TPLHTREDLS FVNPPGSQRV FSSMSFVNPP GSQRVFPFNN EMRFMPSSEN TGRESLKQTC  240
GAPFTDNRSL VINNSNAFTL RSSFVHEHRS PISSYLKPDM GSSRPAWTGS LSSSVASVPM  300
NEGASTVGNF EKGNNICGSR SLPTLQESQA AVSSEKGAAS NTTSSKKKGS SDDWEPSEPF  360
KASFTIPPYI LPSSDALYNP FTDIENLGDR SRNASLSSKG EQARKNSRQQ KDGDSGSGTQ  420
ARECKNDDKS SSCSQNQHQE SVARRSLEPH GVVEGVATSV VDQNDTTTPS KEISSAXRQQ  480
RREDLSFVNP PGSQRVFSSM SFVNPPGSQR VFPFNNEMRF MPSSENTGRE SLKQTCGAPF  540
TDNRSLVINN SNAFTLRSSF VHEHRSPISS YLKPDMGSSR PAWTGSLSSS VASVPMNEGA  600
STVGNFEKGN NICGSRSLPT LQESQAAVSS EKGAASNTTS SKKKGSSDDW EPSEPFKASF  660
TIPPYILPSS DALYNPFTDI ENLGDRSRNA SLSSKGEQAR KNSRQQKDGD SGSGTQAREC  720
KNDDKSSSCS QNQHQESVAR RSLEPHGVVE GVATSVVDQN DTTTPSKEIS SAAAAENRVV  780
LKRSKPAGHD AWHRSDGSSY KKTLKSDEID GEVRSDAEIK VMRQFRTAVV ETVKEMLKPL  840
WREGRLTKDV HNMIVKKAAE KVVSAAVQFH QVPTDTGSVD QYLGLSATKI VKLVEGYVEK  900
YGKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288660.0AK228866.1 Arabidopsis thaliana mRNA for zinc finger (CCCH type) protein - like, clone: RAFL16-19-E15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469419.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLR0HRT60.0R0HRT6_9BRAS; Uncharacterized protein (Fragment)
STRINGscaffold_401971.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein