PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g025110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 431aa    MW: 49051.7 Da    PI: 7.9798
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g025110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.51.1e-381483122135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 
                     + ++drhski T+ g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i +++++                    s          
  Csa15g025110.1 148 PSRTDRHSKIKTANGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIRKIAKShshrcgfssgdeshnrsalgS---------- 232
                     5799************************************************************555555544443333333331.......... PP

             TCP  77 sssssasnsssg................................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                                                                 + ++ + k+k+++ ++    +l+k++rakar+ra++rt ek ++k k
  Csa15g025110.1 233 -----------MdtssslceltpmwtvddrgnntnstettgnkvNGRSMKGKRKRPEPRTPILKKLSKDERAKARERAKDRTMEKRMMKMK 312
                     ...........1223334444455555555555556677888876666666888888888889************************9977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-41149309IPR005333Transcription factor, TCP
PROSITE profilePS5136930.602150208IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.574289306IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MNNNTFSTST TISVDDYMLF PYNDHYPSQP VIPFSPSSSI DDILIHSTSN TSNNHLDHHH  60
QFLPPSPFPQ FDFVPDCALL DSFLPQNNGH DDNQTVTSDN HHPSLLPPLM NNTIGDQPIE  120
PSETITHIED SQTISTSQDP KMKKAKKPSR TDRHSKIKTA NGTRDRRMRL SLDVAKELFG  180
LQDMLGFDKA SKTVEWLLTQ AKPEIRKIAK SHSHRCGFSS GDESHNRSAL GSMDTSSSLC  240
ELTPMWTVDD RGNNTNSTET TGNKVNGRSM KGKRKRPEPR TPILKKLSKD ERAKARERAK  300
DRTMEKRMMK MKGRSQSVNI VEEEVHHQGE IVKNNLSEGN QSSFKVTQCV EDIEELCKND  360
RFAVCNDFVM NKKDHISNES YDIINRKNSS FPMISHHRSQ GAANSIEQQQ QFTDLHHRFW  420
AKPRDLMYNY *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g025110.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0625810.0EF062581.1 Arabidopsis thaliana teosinte branched 1-like 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092501.10.0PREDICTED: transcription factor TCP18 isoform X1
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLR0G5220.0R0G522_9BRAS; Uncharacterized protein
STRINGXP_010465958.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.10.0TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]