PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g023050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 329aa    MW: 38313.6 Da    PI: 10.4679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g023050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-1719111197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++ ++d +++ +  +p +f+++++ kk  s +++++ ++g+sW+v +  +k+ + y+++ +GW +Fv++n L  ++f++F ++g++ f  +v
  Csa15g023050.1  19 FFKIFQSADLSSEYMRAFPYNFMSKIS-KKDFSYKMVIRAQWGKSWNVVV--SKNTRYYYIEkRGWDQFVSDNSLGRNEFITFIHKGKMIF--NV 108
                     89***99999999999*******9996.457999****************..888888555549********************9998888..66 PP

                     EEE CS
              B3  95 kvf 97 
                      ++
  Csa15g023050.1 109 YIY 111
                     665 PP

2B336.49.2e-122363131295
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      ++ l +pk+f+++h    ++sk+ t+++++g+sW+v +    +  r+++++G ++ +++  + +gD + Fkl++  +fe+v+ 
  Csa15g023050.1 236 YLKFLAIPKQFVDDHLP--QKSKMFTIRHPNGKSWKVLC--LVREVRTIFSGGYSKLAREFPISVGDKCNFKLID--TFEFVLD 313
                     446699********963..47889***************..8888899************************997..5555665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-1814119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-1714115IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-1619111IPR003340B3 DNA binding domain
CDDcd100174.06E-1519111No hitNo description
SMARTSM010193.5E-1919114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.85819114IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-18224314IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.588225318IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-16226314IPR015300DNA-binding pseudobarrel domain
CDDcd100176.08E-12226314No hitNo description
SMARTSM010197.8E-13228318IPR003340B3 DNA binding domain
PfamPF023622.3E-10235313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGWNTGFDLI KQERKNLGFF KIFQSADLSS EYMRAFPYNF MSKISKKDFS YKMVIRAQWG  60
KSWNVVVSKN TRYYYIEKRG WDQFVSDNSL GRNEFITFIH KGKMIFNVYI YEQNCMEILI  120
PRNLLSMDSS SGEGQRSYKD VKKENEEMDE SPGRVEIKIS KKKTEETKTS KKKMLNKKVK  180
NGTERGESSR GVELKAMKKK GEASISSKTK KKRKSKSNKK VIDGVPEFEI TIKKSYLKFL  240
AIPKQFVDDH LPQKSKMFTI RHPNGKSWKV LCLVREVRTI FSGGYSKLAR EFPISVGDKC  300
NFKLIDTFEF VLDIPKKTRE ETTHCMII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197213KKKGEASISSKTKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465731.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-131Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLR0I7T01e-171R0I7T0_9BRAS; Uncharacterized protein
STRINGAT3G17010.11e-129(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-127B3 family protein