PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g018030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 515aa    MW: 57131.2 Da    PI: 8.5615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g018030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Csa15g018030.1 102 FVCEICNKGFQRDQNLQLHRRGH 124
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.18E-6101124No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5101124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.2E-5102124IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM00355220144174IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.18E-6174199No hitNo description
SMARTSM00355180179199IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MMNKDMLLHQ HHHQPQQQVQ HQQDENMSNL TSASGGDQAS VSSGNITEAS GSNYFPHHQQ  60
QQFCVPDSSQ PQKKRRNQPG NPDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH  120
RRGHNLPWKL KQRSNKEVIR KKVYVCPEAT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK  180
CDKCSKKYAV QSDCKAHSKT CGTKEYRCDC GTLFSRRDSF ITHRAFCEAL AEETAREVVL  240
PTQNQNNQPN PLLIRQSSSH PHPHHHQTQP NINVSSSSSS SHNIINSLHF ETNNGTSNGN  300
SSSNHLHTFP MKKEQQSNDH IINYHHNIPP WLAPHPHSHQ PHDLTSSNPN PSNGGGRGLF  360
TLASPAMSAT ALLQKAAQMG STKTPTTDLE RSNHNNNLTT TMASMMTSPS VFINSNNNNQ  420
SLFQDYNASG FDHHGGEEAF EDTFGGFLRT NEATTIAPAA RSEKSKSGGG EGLTRDFLGL  480
RPLMSHNEIL SFAGLGNCIN SSASDQLHPK PWQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128141KLKQRSNKEVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6305040.0AJ630504.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g13810.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465251.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_010465253.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLV4LDU40.0V4LDU4_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.3__1485__AT3G13810.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11