PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g001700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 363aa    MW: 40346.4 Da    PI: 7.0714
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g001700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.63.3e-32691902105
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s+++++  ++++s  + ++   +      
  Csa15g001700.1  69 FGGKDRHSKVSTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSlfNHHQSFLNLGQRPVHqdptql 163
                     689*************************************************************9999988877666666666644444566667 PP

             TCP  89 .............kaaksaakskksqksaa 105
                                      s+ + ++++k ++
  Csa15g001700.1 164 gfkinggcveetsT---SSREVNNKEKGDN 190
                     77777777764331...2222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.12271129IPR017887Transcription factor TCP subgroup
PfamPF036342.5E-2871175IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNIMPWKDAN DEVSGGAATR REGDVEEDQE EDQARATSGK TVNKKPPTSS SSSWMKSKDP  60
RIVRVSRAFG GKDRHSKVST LRGLRDRRVR LSVPTAIQLY DLQERLGVDQ PSKAVDWLLD  120
AAKEEIDELP PLPISPENFS LFNHHQSFLN LGQRPVHQDP TQLGFKINGG CVEETSTSSR  180
EVNNKEKGDN DVVFTNNHHH IGSYGTYHHN MEHHHHHHHQ HQQYLSFQGD YHQHQLHSLV  240
PFPSQILVCP MTTSTTTTTI QSLFPSSSSA GSGTMETIDP RQMASHFQMP LMGNSSSSSS  300
QNISTLYSLL HGSSSNNNGG RDINNRMPYV QFSRDNITTA ASMSKLQGSE SSSTSRGSEH  360
HM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1976130155Putative transcription factor PCF6
5zkt_B2e-1976130155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g001700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463608.10.0PREDICTED: transcription factor TCP13-like
SwissprotQ9S7W50.0TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A178VKM00.0A0A178VKM0_ARATH; TFPD
STRINGXP_010463609.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-160plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]