PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g063740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 389aa    MW: 42661.7 Da    PI: 6.9527
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g063740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.99.3e-3549156296
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............................s 66 
                     +g+kdrhsk++T++g+Rd RvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l+++                              +
  Csa14g063740.1  49 TGRKDRHSKVCTAKGPRDWRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAELppwnpadalrqhaanakprktktlvsppplQ 143
                     79**************************************************************6555555444444444333333333333220 PP

             TCP  67 sssaseceaesssssasnsssg...kaaksaa.k 96 
                                          +   +++++++ +
  Csa14g063740.1 144 ---------------------PppqHQETEHHhH 156
                     .....................0111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-3149157IPR005333Transcription factor, TCP
PROSITE profilePS5136932.70851109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAASHRLVDS PSPPMRHNQQ SAFTPSPTEN DGGCGEIVEV QGGHIVRSTG RKDRHSKVCT  60
AKGPRDWRVR LSAPTAIQFY DVQDRLGFDR PSKAVDWLIK KAKSAIDDLA ELPPWNPADA  120
LRQHAANAKP RKTKTLVSPP PLQPPPQHQE TEHHHHQIGE EDNESSFLPA SMDSDSIADT  180
IKSFFPVASS QQSYHHQPPS RANTQNQDLL RLSLQSFQNG PPFTAQTEPV LFSGQSNPLG  240
FDSSTASWEQ NHQSPEFGKI QRLVTWNNGG AADSPGSTGG GGGYVFASPS PVYSQSQLLS  300
QRGPLQSINN TPMIRAWFDP HHHHHHQSMT TDDLHHHHHP YQSAIPGIAF ASSGEFSGFR  360
IPARFHGEQE EEHGGDNKPS SASSDSRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1856109154Putative transcription factor PCF6
5zkt_B1e-1856109154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g063740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0080070.0AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence.
GenBankAY0996780.0AY099678.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds.
GenBankBT0002660.0BT000266.1 Arabidopsis thaliana putative flower development protein cycloidea (At1g53230) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010462201.10.0PREDICTED: transcription factor TCP3-like
SwissprotQ9MAH80.0TCP3_ARATH; Transcription factor TCP3
TrEMBLD7KKF40.0D7KKF4_ARALL; Uncharacterized protein
STRINGXP_010462201.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.10.0TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]