PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g059030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 342aa    MW: 39738.8 Da    PI: 6.5474
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g059030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-113884254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    +ykGV + + +g W A+I+       +kr++lg+f +a eAa a++ a  kl+
  Csa14g059030.1 38 KYKGVVQQP-NGNWGAQIYTD-----HKRIWLGTFKSAAEAATAYDSASIKLR 84
                    8********.8******9883.....4*********************99997 PP

2B384.41e-26168270186
                     EEEE-..-HHHHTT-EE--HHH.HTT.................---....--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkke..esktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                     f+k+ltpsdv+k++rlv+pkk+a ++                 g      e+++l+++d ++ r+W++k++y+k+s+++v+tkGW++Fv++++Lk
  Csa14g059030.1 168 FQKELTPSDVGKLNRLVIPKKYAVKYfpyinddpnekleegeiG---GavEDVELVFYDrRTMRQWKFKYCYWKSSQSFVFTKGWNSFVREKKLK 259
                     99****************************99888766666652...044899******6666******************************** PP

                     TT-EEEEEE-S CS
              B3  76 egDfvvFkldg 86 
                     e+D++ F+  +
  Csa14g059030.1 260 EKDVISFYICD 270
                     *******9544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.0E-1738101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-173896IPR001471AP2/ERF domain
CDDcd000181.70E-213895No hitNo description
PROSITE profilePS5103217.6353895IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-143895IPR016177DNA-binding domain
PRINTSPR003674.4E-53950IPR001471AP2/ERF domain
PRINTSPR003674.4E-55975IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.7E-30165267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-26166270IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-22168267No hitNo description
PfamPF023621.2E-23168270IPR003340B3 DNA binding domain
SMARTSM010191.9E-20168281IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702168284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTETETETET FLPPKKRMRL SDEPEKALVT VTDPGNVKYK GVVQQPNGNW GAQIYTDHKR  60
IWLGTFKSAA EAATAYDSAS IKLRRFDANS HRNFPRSDLT VHEEEFQDTY ELEAVLNMIR  120
DGSYQQKFRE FLKLRSQMVA RINDGGSKQV RGEADKESDK CFSWTQQFQK ELTPSDVGKL  180
NRLVIPKKYA VKYFPYINDD PNEKLEEGEI GGAVEDVELV FYDRRTMRQW KFKYCYWKSS  240
QSFVFTKGWN SFVREKKLKE KDVISFYICD VPDNVKTVEG QDKNFWMIDV HYYSENGSVV  300
PEEVNMKTEN FVSSKLKDEE AKTEEKKGSF MLFGVRIQCS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-23166269696B3 domain-containing transcription factor NGA1
5os9_B4e-23166269696B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g059030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463359.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-180RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLR0GSI30.0R0GSI3_9BRAS; Uncharacterized protein
STRINGXP_010463359.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-171RAV family protein