PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g059010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family RAV
Protein Properties Length: 421aa    MW: 48564.1 Da    PI: 8.9339
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g059010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.73.3e-094085253
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                    +ykGV +   +g W ++I+       +kr++lg+f +a eAa a++ a  kl
  Csa14g059010.1 40 KYKGVVQLQ-NGHWGVQIYTD-----QKRIWLGTFKSAVEAAMAYDSASIKL 85
                    8****9988.8******8883.....5*******************998776 PP

2B383.42e-26164257285
                     EEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     +k+ltpsdv+k++rlv+pk++a ++          +g+ ee+++++ +d++ r+W+++++y+k+s+++v+t+GWk+Fv+ ++Lke+D++ F+  
  Csa14g059010.1 164 QKELTPSDVGKLNRLVIPKRYAVNYmpsirpkekeEGEIEEGVEIVCYDSELRQWKFRYCYWKSSQSFVITSGWKSFVRKKKLKEKDVISFYTC 257
                     799*******************999*****998886666799*************************************************943 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-1140103IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-114097IPR016177DNA-binding domain
PfamPF008475.3E-54085IPR001471AP2/ERF domain
CDDcd000186.27E-174097No hitNo description
Gene3DG3DSA:3.30.730.101.4E-134098IPR001471AP2/ERF domain
PROSITE profilePS5103215.4884097IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.9E-29157257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-25160260IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-20162255No hitNo description
SMARTSM010191.5E-17163278IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758163278IPR003340B3 DNA binding domain
PfamPF023628.8E-24164258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MTETETFLPP KKRMRLDDEP EKAQVVASAT KTVAVRGKVK YKGVVQLQNG HWGVQIYTDQ  60
KRIWLGTFKS AVEAAMAYDS ASIKLGRYDV NSYRNFPRSD VTTHEPEFQD RFTTESLLNM  120
IREGSYQQKF RDFLRSRSKI VGGSKQVVRG EESNKGFSRT ELYQKELTPS DVGKLNRLVI  180
PKRYAVNYMP SIRPKEKEEG EIEEGVEIVC YDSELRQWKF RYCYWKSSQS FVITSGWKSF  240
VRKKKLKEKD VISFYTCDVK TLEGQIKHSL MIDVHYSSHN GSVVPEEANM TVHDSSEEGM  300
KTEKFVSSKL KHEETKTEEN KGSFLLFGSK TRLELSFTHQ KSLSSFYICD VPDNVKTVEG  360
QDKNFWMIDV HYYSENGSVV PEEVNMKTER FVSSKLKDEE TKTEEKKISF MLFGVGIQCS  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-22159257496B3 domain-containing transcription factor NGA1
5os9_B3e-22159257496B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g059010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010463344.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_010463358.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_019091357.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_019091358.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_019091359.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-153RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLD7KGR61e-161D7KGR6_ARALL; Uncharacterized protein
STRINGXP_010463344.10.0(Camelina sativa)
STRINGXP_010463358.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-147RAV family protein