PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g037850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 333aa    MW: 37411.8 Da    PI: 7.7333
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g037850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.11.8e-35471632134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                      g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i +l+  +++          +++++        ++  +
  Csa14g037850.1  47 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPINTNFD--L-----ENQNQ--------TK--S 124
                     689************************************************************944444..2.....22222........22..3 PP

             TCP  97 skksqksaasalnlak.esrakarararertrekmrikn 134
                       +s +s++s l+l++ e r kar+rarert+++  ++ 
  Csa14g037850.1 125 ACSSGTSESSLLSLSRtEIRGKARERARERTAKERDKDL 163
                     34455666667999999**************99987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-2948170IPR005333Transcription factor, TCP
PROSITE profilePS5136930.78849107IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.461141159IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MELDEDIEVQ RQQQQSRKLQ RFTDDNTGMM KDWNNPSSRI IRVSRASGGK DRHSKVLTSK  60
GLRDRRIRLS VATAIQFYDL QDRLGFDQPS KAVEWLINAA SDSITDLPPI NTNFDLENQN  120
QTKSACSSGT SESSLLSLSR TEIRGKARER ARERTAKERD KDLQNAHQSS FTQLLTGGFD  180
QQQQQQQPDN HRNWTGGSDC FNPVQFIPNS SSTSHQEPTM NQNNHPFSFV PDQYNFGISS  240
SSALNGGYSS RGTLQSNSQS LFLNNNITQR ASISSSSSSS SPMDSQSISF FMATPPPLDH  300
HSHQLPSTFD GRLYLYYGEG NRNSDDKDKD RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2054108155Putative transcription factor PCF6
5zkt_B3e-2054108155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g037850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735061e-156AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence.
GenBankAY0350081e-156AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankAY0576721e-156AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds.
GenBankAY1138981e-156AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankCP0026841e-156CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460809.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_010460810.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_010460811.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_019091815.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_019091816.10.0PREDICTED: transcription factor TCP24 isoform X1
SwissprotQ9C7581e-177TCP24_ARATH; Transcription factor TCP24
TrEMBLR0I1L01e-179R0I1L0_9BRAS; Uncharacterized protein
STRINGXP_010460808.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-119TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]