PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g035750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 240aa    MW: 27093.3 Da    PI: 4.8405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g035750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-183483255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  Csa14g035750.1 34 KYVGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 83
                    79*******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-323497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-283491IPR001471AP2/ERF domain
PfamPF008473.2E-133483IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-213492IPR016177DNA-binding domain
CDDcd000187.59E-323490No hitNo description
PROSITE profilePS5103221.2463491IPR001471AP2/ERF domain
PRINTSPR003676.2E-93546IPR001471AP2/ERF domain
PRINTSPR003676.2E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEINGNSNVG SSSRSKKSHR QKQPQPQQRN EEIKYVGVRR RPWGRYAAEI RNPTTKERYW  60
LGTFDTAEEA ALAYDRAARS IRGLTARTNF VYSDMPRGSS VTSFISPDES QRFISEIFNP  120
PSQPEARYNN TNNNLHTSSN NQNQNSIEFS YNGWPQESES GYQSMNSNDE HCDHELPPLP  180
PSTCFGAELT IPETDSYWNV AHANIDTFAF ELDGFVDQNS LGQSGTEGFD SLSSTFFYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1831901171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g035750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankAC0694710.0AC069471.4 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460592.11e-179PREDICTED: ethylene-responsive transcription factor ERF087-like
SwissprotQ9FZ901e-141ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A3N6SY371e-141A0A3N6SY37_BRACR; Uncharacterized protein
TrEMBLA0A3P6DY601e-141A0A3P6DY60_BRAOL; Uncharacterized protein
STRINGXP_010460592.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-118ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]