PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g001070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 182aa    MW: 20772.5 Da    PI: 6.1789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g001070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017157173117
                     EEETTTTEEESSHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                     ++C++C+++Fs+   L+
  Csa14g001070.1 157 HECTICHRVFSSGQALE 173
                     78*********987776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.78E-682113No hitNo description
PfamPF139127.6E-984109IPR007087Zinc finger, C2H2
PROSITE profilePS501579.97285112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
PfamPF139121.2E-6156173IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNSSCIYFVM FSRGQHDEDN MSTRRPWKRP DSHHHKHLNL SANEDEELAN CLVLLSNSGE  60
AXKKLFNHRS EIRIPPSSGT TAQVFQCKAC KKLFTSHQAL GGHRASHKKV KGYFASQDKE  120
EEDEEEYKED DDEEEDEMED EDKSTAHIPR KRSSNTHECT ICHRVFSSGQ ALEQTHCTSS  180
N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026844e-84CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankBT0300404e-84BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds.
GenBankAB4934224e-84AB493422.1 Arabidopsis thaliana At1g02040 mRNA for hypothetical protein, partial cds, clone: RAAt1g02040.
GenBankU899594e-84U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305993.14e-63hypothetical protein CARUB_v10011272mg
TrEMBLR0GSW44e-63R0GSW4_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10000182e-62(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-17C2H2-like zinc finger protein