PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g034660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 281aa    MW: 32078 Da    PI: 9.5146
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g034660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF581.2e-18342241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +ien++ r+ tf kR+ g+lKKA+EL +LCd+ ++vi+ s
  Csa13g034660.1  3 FIENETARKSTFKKRKRGVLKKAHELATLCDIPICVIVNS 42
                    8************************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-16153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.54142IPR002100Transcription factor, MADS-box
CDDcd002665.34E-22178No hitNo description
SuperFamilySSF554557.06E-21288IPR002100Transcription factor, MADS-box
PfamPF003197.9E-17342IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAFIENETAR KSTFKKRKRG VLKKAHELAT LCDIPICVIV NSAYESNPEM WPSREAADKV  60
VSQWRMMSVM DQTKRMVNQE SFLQQRITKA TESWRKARRE NKELEMKNIM FDCLSGKTLV  120
SRLPKCDLRD FGSVIEQHLK DVNRRMEILK RNDDESSSSL VPIDAATTSS AMPMIEMGSS  180
SSSGMPMIEM GSSSVEFHEK IRDQSQNTLN MKNTNKDLDM NKKQCVMPMI EMGSSSSSVM  240
HMIEMGSSSV GFHDKIRDQI QKTLNMKNTN KDLDLNKKQW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g034660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8306901e-179AB830690.1 Turritis glabra AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e058.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455018.11e-157PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_010455019.11e-157PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLS6B3Z01e-115S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35
STRINGXP_010455018.11e-156(Camelina sativa)
STRINGXP_010455019.11e-156(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.14e-98M-type_MADS family protein