PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g034640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26751.8 Da    PI: 10.0677
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g034640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.48.8e-191049241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +ien++ r+ tf kR+ g+lKKA+EL +LCd+ ++vi+ s
  Csa13g034640.1 10 FIENETARKSTFKKRKRGVLKKAHELATLCDIPICVIVNS 49
                    8************************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.007149IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-24160IPR002100Transcription factor, MADS-box
CDDcd002666.12E-25285No hitNo description
SuperFamilySSF554551.57E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-11323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-171049IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTRKKVNMAF IENETARKST FKKRKRGVLK KAHELATLCD IPICVIVNSA YESNPEMWPS  60
REAADKVVSQ WRMMSVMDQT KRMVNQESFL QQRITKATES WRKARRENKE LEMKNIMFDC  120
LSGKTLVSRL PKCDLRDFGS VIEQHLKDVN RRMEILKRND DESSSSLVPI DAATTSSAMP  180
MIEMGSSSSS GMPMIEMGSS SVEFHEKIRD QSQNTLNMKN TNKDLDMNKK QW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNMAFIENETARKSTFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g034640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8306900.0AB830690.1 Turritis glabra AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e058.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455018.11e-172PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_010455019.11e-172PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLS6B3Z01e-121S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35
STRINGXP_010455018.11e-172(Camelina sativa)
STRINGXP_010455019.11e-172(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-104M-type_MADS family protein