PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g027860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 266aa    MW: 28595.6 Da    PI: 10.3913
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g027860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.52e-37341533129
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                     +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s  +sn+s +         
  Csa13g027860.1  34 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSIRGSNNSTSlssslldhk 127
                     79*************************************************************99999777.23333333322222334444444 PP

             TCP  89 .................kaaksaakskksqksaasalnlakesrakarararertrek 129
                                      +                                a e +++ 
  Csa13g027860.1 128 pttllgssspfilgkrvR--------------------------------ADEDNHNH 153
                     555544333333322221................................22211111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8923993IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-3439170IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSIHNNNNNG VMISSSSNGS ALIEQQQQSS SVVVKKPPAK DRHSKVDGRG RRIRMPIICA  60
ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTASVSI RGSNNSTSLS  120
SSLLDHKPTT LLGSSSPFIL GKRVRADEDN HNHNNNNSSG GKDESFTTTT PAGFWAVPAR  180
PDFGQVWSFT GGGAPVQEMF LQQQHHHHHH QQPLFVHHHQ QQQQQAAMGE ASAARVGNYL  240
PGHLNLLASL SGGSPGSGRR DEDPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g027860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454608.10.0PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX21e-130TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A178UB731e-125A0A178UB73_ARATH; Uncharacterized protein
STRINGXP_010454608.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-82TCP family protein