PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g016910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 267aa    MW: 30191.2 Da    PI: 9.216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g016910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-0599121223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  Hi+  H
  Csa13g016910.1  99 SCSVCSRVYPTSRLLSIHISEaH 121
                     6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.227196IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807396IPR007087Zinc finger, C2H2
SMARTSM00355598121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100121IPR007087Zinc finger, C2H2
SMARTSM003550.095136161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
AMAMGMAVDT VGELAFPVWN PIRRRFPPDS PFFASGNVER ELLAKQVALD LTEDEINHLQ  60
IIVETESSRR ISCPIAGCPE RLKSLDHFED HYNARHTASC SVCSRVYPTS RLLSIHISEA  120
HDSFFQAKVA RGYDMYECLV EGCGLKFKTY KARHRHLVDK HKFPTTFEFF KRTQLSKKRR  180
EKLQRQHVSK LKHKEDKEEA SSDAKEVEDK ASVDGLVSAL STLTTADTTP SNVSFGRRHG  240
RGLTFVPRSV HREKRTEYSS APGPTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g016910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
GenBankAK2283560.0AK228356.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-77-M10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453529.10.0PREDICTED: zinc finger protein 511 isoform X1
TrEMBLA0A178UDE41e-180A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF41e-180Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
STRINGXP_010453529.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-176zinc ion binding;nucleic acid binding;zinc ion binding