PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g013710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 271aa    MW: 30046.6 Da    PI: 7.6323
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g013710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C ++F ++  L  H++ H
  Csa13g013710.1 102 FSCNYCQRTFYSSQALGGHQNAH 124
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-797129No hitNo description
Gene3DG3DSA:3.30.160.608.4E-4100128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDSSSGKPRP SDSSCIVSAS TTLPFPTKLS LDNYNIYAES AQAEENYDQK AGEKGIRLDL  60
KLAGYASSQP ELNQELNLLD CLEASVVTPS FNGSSSTEQK LFSCNYCQRT FYSSQALGGH  120
QNAHKRERTL AKRGQRMASA AAFGHPYGFA PFPFHGQYSN RSLAIQAHSM SHKPSSYNVF  180
GGEYGQINWS RIPLVQQPAI GKLPSTENHY NHHQMMIAPP LTSTWENMGR FDVGRIPVEY  240
PTPELWRRGG ELLKPAEEEQ QKNLDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB4937450.0AB493745.1 Arabidopsis thaliana At5g10970 mRNA for hypothetical protein, partial cds, clone: RAAt5g10970.
GenBankAL3912220.0AL391222.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project).
GenBankAL3652340.0AL365234.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453131.10.0PREDICTED: zinc finger protein 3-like
SwissprotQ392623e-79ZFP3_ARATH; Zinc finger protein 3
TrEMBLR0HFT80.0R0HFT8_9BRAS; Uncharacterized protein
STRINGAT5G10970.11e-173(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-167C2H2 family protein