PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g008230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 329aa    MW: 36728.4 Da    PI: 7.5975
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g008230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.62.6e-3387200199
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f+k ltpsdv+k++rlv+pk++ae++               ++++e+++ l++ede+g+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v
  Csa13g008230.1  87 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssgasdtSSSSEKGMLLSFEDETGKAWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVV 181
                     99***********************************9999777789************************************************ PP

                     EEEE-SSSEE..EEEEE-S CS
              B3  81 vFkldgrsefelvvkvfrk 99 
                      F++++++ ++l+++++r+
  Csa13g008230.1 182 FFQRHRSDIRRLFIGWRRR 200
                     ***98889999*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-4083209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-2985200IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-2686189No hitNo description
PfamPF023621.6E-3087200IPR003340B3 DNA binding domain
PROSITE profilePS5086313.91687201IPR003340B3 DNA binding domain
SMARTSM010192.1E-2587201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
SYYISTTSTH LSLSPNHLSL SLYTTLHSLS LYLFRFLSPR KMSVNHYSTD HHHTLLWQQQ  60
QHRHTTDTSE ATTTATWLND DLKESLFEKS LTPSDVGKLN RLVIPKQHAE KYFPLNAVVV  120
SSGASDTSSS SEKGMLLSFE DETGKAWRFR YSYWNSSQSY VLTKGWSRFV KDKQLDPGDV  180
VFFQRHRSDI RRLFIGWRRR GQGSSSSSAP ATNSATSMAA PSYRQIHHAS TNYSNPPSHS  240
EFSHYGAAVA TAAEETHSTP SSSAVAGGSS RTLRLFGVNL ECQMDENDGD DSVAAAAAVE  300
SPDGYYGQNM YYYYSQPHNM NIAFTGER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-478421211129DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0067000.0AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452542.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X1
SwissprotQ9FNI31e-155Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLR0GWN81e-157R0GWN8_9BRAS; Uncharacterized protein
STRINGAT5G06250.21e-153(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-122B3 family protein