PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g003800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 302aa    MW: 32352.8 Da    PI: 4.3112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g003800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-05274297123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     + C+ C+++F++ + L++H +  H
  Csa13g003800.1 274 FGCNSCSRTFTSEMGLQSHTKAkH 297
                     56*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.845274301IPR007087Zinc finger, C2H2
PROSITE patternPS000280276297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEFWGVEVKP DGSLRVDPGE DMLVHISQAA LGDSKKKVKE PIQLFVEVGG QKLIIGNLSH  60
GKFPQLSTEL VLEKGFELSH NWKNGSVFFT GYKVDASDPE AEDMSDDEPA VGSAKAEPAV  120
AASGVKQVNF QLPNAEVKAQ EDDDEDDSEE DSSDDDESSD ESGDEEEKKV TAEVDSDEDD  180
EDDSSDDDED DSSEEDTPKK PEESKKRSAE ANSSKNTASN KKAKFVTPQK TESKKPHVHI  240
ATPHPSKQAG KNSGGSSNGE SSKKQQTPKS AGAFGCNSCS RTFTSEMGLQ SHTKAKHSAA  300
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452271.10.0PREDICTED: histone deacetylase HDT3-like
SwissprotQ9LZR51e-126HDT3_ARATH; Histone deacetylase HDT3
TrEMBLR0GWD31e-128R0GWD3_9BRAS; Uncharacterized protein
STRINGAT5G03740.11e-124(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.19e-61histone deacetylase 2C